PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G008100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 163aa    MW: 17811.1 Da    PI: 4.8593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G008100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.8e-1448130996
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                         + ++++ +v+p +f ++      +     +    grsW++++  ++  +   + + W +F+ +n+L++gD +vF+l++   ++e+v+ v
  Brast07G008100.1.p  48 SRTQLRDMVIPARFQRRLPAR--R--AAAVVRCAGRSWTMNY--CGDTKVKRFDTAWAHFAADNRLQAGDACVFELVSGaGGREMVFEV 130
                         55566779******9888533..3..5778899*********..666656668999*******************99776888888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1836134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1638132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.61640136IPR003340B3 DNA binding domain
CDDcd100178.17E-1341134No hitNo description
SMARTSM010192.6E-542136IPR003340B3 DNA binding domain
PfamPF023621.5E-1247129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MESSASWRQL PDVLIVKPAG EIIFPASDEQ HKTTPLSGDH PFFTAILSRT QLRDMVIPAR  60
FQRRLPARRA AAVVRCAGRS WTMNYCGDTK VKRFDTAWAH FAADNRLQAG DACVFELVSG  120
AGGREMVFEV QVLRGGGLPE PEPEEDDGAA NDKPIVIGDE DD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751968.12e-94PREDICTED: B3 domain-containing protein Os06g0112300-like
SwissprotQ9LHY92e-36Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLI1H1W12e-94I1H1W1_BRADI; Uncharacterized protein
STRINGBRADI1G51730.15e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933